Converters
The following list of converters is provided to help you convert your raw data into a BIDS compliant dataset.
MRI Converters
Converters for processing MRI data.
Name | Expected input | Language | Distribution | Updated |
---|---|---|---|---|
BIDScoin | DICOM PAR/REC physiological PET Nifti |
Python |
|
|
BIDSconvertR | DICOM |
R |
||
BIDSme | DICOM Nifti Brain Vision |
Python |
||
BMAT | DICOM |
Python |
|
|
BrkRaw | Bruker MRI scanner data |
Python |
||
Clinica | ADNI AIBL GENFI HABS IXI NIFD OASIS OASIS-3 UKB |
Python |
||
Data2Bids | not DICOM |
Python |
|
|
Dcm2Bids | DICOM |
Python |
|
|
Explore ASL | DICOM Nifti |
MATLAB |
||
FieldTrip - data2bids | any EEG or MEG file format NBS Presentation logfiles DICOM nifti |
MATLAB |
||
HeuDiConv | DICOM |
Python |
|
|
Horos (Osirix) export plugin | ??? |
objective C |
||
OpenfMRI2BIDS | openfMRI datasets |
??? |
||
ReproIn | DICOM |
Python |
|
|
SAMRI | Bruker ParaVision NIfTI |
Python shell |
||
XNAT2BIDS | DICOM |
shell |
||
bidskit | DICOM |
Python |
|
|
dac2bids | DICOM |
Python |
||
ezBIDS | DICOM NIfTI/JSON events (tsv, csv, txt, out, xlsx) |
Vue TypeScript Javascript Python shell |
||
mercure-dcm2bids | DICOM |
Python |
|
|
niix2bids | Nifti converted from DICOM using dcm2niix |
Python |
PET Converters
Converters for processing PET data.
Name | Expected input | Language | Distribution | Updated |
---|---|---|---|---|
BIDScoin | DICOM PAR/REC physiological PET Nifti |
Python |
|
|
Clinica | ADNI AIBL GENFI HABS IXI NIFD OASIS OASIS-3 UKB |
Python |
||
PET2BIDS | DICOM ECAT |
MATLAB Python |
EEG/MEEG/iEEG Converters
Converters for processing EEG, MEEG, and/or iEEG data.
Name | Expected input | Language | Distribution | Updated |
---|---|---|---|---|
BIDSme | DICOM Nifti Brain Vision |
Python |
||
EEG2BIDS | {'EDF, Set': 'EEG or sEEG'} |
Javascript Python |
||
EEGLAB | EDF BDF Brain Vision Exchange Format EEGLAB .set files |
MATLAB |
||
FieldTrip - data2bids | any EEG or MEG file format NBS Presentation logfiles DICOM nifti |
MATLAB |
||
MNE-BIDS | raw MEG for BIDS conversion raw EEG for BIDS conversion raw iEEG for BIDS conversion raw NIRS for BIDS conversion BIDS dataset for reading |
Python |
|
|
sovabids | ??? |
Python |
Physio Converters
Physiological data converters.
Name | Expected input | Language | Distribution | Updated |
---|---|---|---|---|
BIDScoin | DICOM PAR/REC physiological PET Nifti |
Python |
|
|
bidsphysio | CMRR AcqKnowledge Siemens PMU |
Python |
|
|
phys2bids | Acqknowledge Labchart GE physiological files |
Python |
|
BIDS Converters
Converters that take a BIDS dataset as input to convert it into something else. Not mentioned here are the many software that can import a BIDS data as data structure they are more familiar with.
Name | Expected input | Language | Distribution | Updated |
---|---|---|---|---|
BIDS2ISATab | BIDS |
Python |
||
BIDS2NDA | BIDS |
Python |
||
bids2xar - for XNAT import | BIDS |
Python |
Miscellaneous Converters
Not exactly BIDS converters but are common tools that can used by other BIDS converters.
Name | Expected input | Language | Distribution | Updated |
---|---|---|---|---|
convert-eprime | E-Prime log files |
Python |
||
sim2bids | CSV/TSV/DAT/Numpy arrays/HDF5 zip folders code files in MATLAB/Python/R |
Python |