BIDS Apps
BIDS Apps are typically docker or singularity images that allow you to seamlessly run many applications without the need to installing all dependencies, and are generally guaranteed to run on your data, provided your data is BIDS compliant. Below is a list of many commonly used BIDS Apps.
Status of the "latest" docker image
Name | Input datatypes | Use raw | Use derivatives | Status latest | Number docker pulls | Image size |
---|---|---|---|---|---|---|
afni_proc | func |
yes | no | |||
antsCorticalThickness | anat |
yes | no | |||
baracus | anat |
yes | no | |||
brainiak-srm | func |
no | yes | |||
BrainSuite | anat dwi func |
yes | no | |||
BROCCOLI | no | no | ||||
CPAC | func |
yes | no | |||
DPARSF | func |
yes | no | |||
example | no | no | ||||
freesurfer | func |
yes | no | |||
giga_connectome | func |
no | yes | |||
HCPPipelines | anat func dwi |
yes | no | |||
hyperalignment | func |
no | yes | |||
MAGeTbrain | anat |
yes | no | |||
mindboggle | anat |
yes | no | |||
MRtrix3_connectome | dwi |
yes | yes | |||
ndmg | anat dwi |
yes | no | |||
nipypelines | func |
yes | no | |||
oppni | func |
yes | no | |||
PyMVPA | func |
no | yes | |||
QAP | anat func |
yes | no | |||
rsHRF | func |
no | yes | |||
SPM | yes | yes | ||||
tracula | dwi |
yes | no | |||
bidsMReye | func |
no | yes | |||
bidspm | anat func |
yes | yes | |||
fmriprep-fake | anat func |
yes | no | |||
funcmasker-flex | func |
yes | no | |||
gift-bids | no | no | ||||
hippunfold | anat |
yes | no | |||
micapipe | anat func dwi fmap |
yes | no | |||
fmriprep | anat func |
yes | no | |||
dmriprep | anat dwi |
yes | no | |||
mriqc | anat func |
yes | no | |||
nibabies | anat func |
yes | no | |||
nirodents | anat func |
yes | no | |||
smriprep | yes | no | ||||
fmripost-aroma | func |
no | yes | |||
fmripost-phase | func |
no | yes | |||
fmripost-rapidtide | func |
no | yes | |||
BIDSonym | anat |
yes | no | |||
aslprep | perf |
yes | no | |||
xcp_d | func |
no | yes | |||
qsiprep | dwi |
yes | no | |||
qsirecon | dwi |
no | yes | |||
fitlins | func |
no | yes | |||
reproa | anat fmap func |
yes | no | |||
connectomemapper3 | anat func dwi eeg |
yes | yes | |||
multiscalebrainparcellator | anat |
yes | no | |||
mialsuperresolutiontoolkit | no | no | ||||
BIBSnet | anat |
no | no | |||
petdeface | pet anat |
no | no |
Status of the default branch on the source repository
Name | Status unstable | Updated | Number issues |
---|---|---|---|
afni_proc | Status unstable | ||
antsCorticalThickness | Status unstable | ||
baracus | Status unstable | ||
brainiak-srm | Status unstable | ||
BrainSuite | Status unstable | ||
BROCCOLI | Status unstable | ||
CPAC | Status unstable | ||
DPARSF | Status unstable | ||
example | Status unstable | ||
freesurfer | Status unstable | ||
giga_connectome | Status unstable | ||
HCPPipelines | Status unstable | ||
hyperalignment | Status unstable | ||
MAGeTbrain | Status unstable | ||
mindboggle | Status unstable | ||
MRtrix3_connectome | Status unstable | ||
ndmg | Status unstable | ||
nipypelines | Status unstable | ||
oppni | Status unstable | ||
PyMVPA | Status unstable | ||
QAP | Status unstable | ||
rsHRF | Status unstable | ||
SPM | Status unstable | ||
tracula | Status unstable | ||
bidsMReye | Status unstable | ||
bidspm | Status unstable | ||
fmriprep-fake | Status unstable | ||
funcmasker-flex | Status unstable | ||
gift-bids | Status unstable | ||
hippunfold | Status unstable | ||
micapipe | Status unstable | ||
fmriprep | Status unstable | ||
dmriprep | Status unstable | ||
mriqc | Status unstable | ||
nibabies | Status unstable | ||
nirodents | Status unstable | ||
smriprep | Status unstable | ||
fmripost-aroma | Status unstable | ||
fmripost-phase | Status unstable | ||
fmripost-rapidtide | Status unstable | ||
BIDSonym | Status unstable | ||
aslprep | Status unstable | ||
xcp_d | Status unstable | ||
qsiprep | Status unstable | ||
qsirecon | Status unstable | ||
fitlins | Status unstable | ||
reproa | Status unstable | ||
connectomemapper3 | Status unstable | ||
multiscalebrainparcellator | Status unstable | ||
mialsuperresolutiontoolkit | Status unstable | ||
BIBSnet | Status unstable | ||
petdeface | Status unstable |